PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A13G1873
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 297aa    MW: 33196.2 Da    PI: 5.041
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A13G1873genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-152067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l+++    G g+W+ +ar  g+ R++k+c++rw +yl
      Gh_A13G1873 20 KGLWSPEEDDKLINYMLTNGQGCWSDVARNAGLQRCGKSCRLRWINYL 67
                     678*******************************************97 PP

2Myb_DNA-binding51.52.3e-1673116146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ ++eE+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
      Gh_A13G1873  73 RGAISPEEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 116
                      7889******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.51567IPR017930Myb domain
SuperFamilySSF466898.2E-2818114IPR009057Homeodomain-like
SMARTSM007172.3E-111969IPR001005SANT/Myb domain
PfamPF002497.2E-142067IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-232174IPR009057Homeodomain-like
CDDcd001673.58E-92367No hitNo description
PROSITE profilePS5129425.52568122IPR017930Myb domain
SMARTSM007171.4E-1572120IPR001005SANT/Myb domain
PfamPF002492.1E-1473116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-2575123IPR009057Homeodomain-like
CDDcd001675.01E-1177115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MMRKPNNGST ITTTNNKLRK GLWSPEEDDK LINYMLTNGQ GCWSDVARNA GLQRCGKSCR  60
LRWINYLRPD LKRGAISPEE EELIVHLHSI LGNRWSQIAA RLPGRTDNEI KNFWNSTIKK  120
RLKNSSPNTP DSSSSKFSKD SNPVGFITME QQGVLLPTYL DLSSTSSNSS LQSTVTNPGT  180
AFGATIGYFA TNVNGLYGEN EMLCGEELYM PPLETVRENL KIENTFESNI TTIPTTNNNN  240
INNNNIVDCS MKSENVMTGA AIGNFWLGEE IKVGEWDLED LMKDVSSFPF LDFQSSI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271512222128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6153551e-147JX615355.1 Gossypium hirsutum clone NBRI_GE59296 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464842.10.0PREDICTED: transcription factor MYB46-like
SwissprotQ9LXV26e-73MYB46_ARATH; Transcription factor MYB46
TrEMBLA0A0B0MHC50.0A0A0B0MHC5_G
STRINGVIT_06s0004g02110.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61152347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.13e-70myb domain protein 46